rs33588024 SNP Detail

Summary

• ID
  rs33588024
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17943990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCTACT CTTCCTCAGG
  CACATCAAGG CAGGTAGTGT TCTGGGACGC AGCGGCCAGT CTCCTCTCAG GGCTTGGGAT
  CCTGGTCTCT GCCCCGGAGC AGTGAGATGG GTTGGTAATT TGCAGGGCTA ACTTTTCTTT
  GTATGTGTTT TATGCAAACC CGTGATGAGA TTGTACAGCT GGCTTCTGTT CTTACAGAAC
  K
  TATCTGGTGC GAGGTTGACC CCATATACAT ACCAGTAGTG TTGCTCTTGG GAGTAGGGGC
  TATCCTTGCC TTGCTGACAA CTCGTGACAC AGAGTGGATG CTCAAGTGAT TATGCGAGTC
  AGGTGGTATA GCACATGACA GGCACAATAA ACTTTGATCT GTGCTGGAGG AGAATGGTTT
  CAGATGAGAA GGACCAGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47816600	NES11703472	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33588024					SNP	T	G	G	G	G	G	G	G	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47816600	NES11703472	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17943990 () rs orientation: forward

Symbol	Name	Function Class
Rr626887	regulatory region 626887	within coordinates
St7	suppression of tumorigenicity 7	968 bp downstream