rs33587973 SNP Detail

Summary

• ID
  rs33587973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104567393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAGATC CTAATGCACT
  TTCGATAAGA AAACACATTT GTCTTCTGGG CAGATGAAGC CAGAGTTGAG TGTGTTAAAG
  GCAGGAAGAT AAAGAGTTGG AGGTCAGAGG AGCTGGATAG AGAGATAGCT CAGGTCTAAA
  AAGCACTCCT GCCCTTCGGA GAGTTTAAGT TTGGTTCCTA GCACCCAGGT CAGGCAGCTC
  Y
  CAACTCTTTT GACACCTGCT GCAGGGGACC TCTTATAGTA CATAATAAAT AAAATATTGT
  AAACCTGGAG GTCAGCTAGG CATTCTATCC AACATCTTTA ATCCCAGCAC TTGGGCAGCA
  GAGACAGACT AGCCTAGTCT GCACAGTAAG TTCCAAAATA TCCAGGGCTA CATAGAGAAA
  CCTTGTTGAA AACAAAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46831893	NES10725295	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33587973					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831893	NES10725295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104567393 () rs orientation: forward

Symbol	Name	Function Class
Gm29561	predicted gene 29561	1266 bp downstream
Rr582564	regulatory region 582564	404 bp proximal
Rr582565	regulatory region 582565	1778 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	1615 bp downstream