rs33587735 SNP Detail

Summary

• ID
  rs33587735
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103627336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AGCGGGAGGG AAGGACAAGA
  S
  CAGCAAGTCA GGAGACGGAC GGGGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45296805	mCV22332914	ABI	CRAMUS_MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33587735					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103627336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Caprin1	cell cycle associated protein 1			Intron
				mRNA-UTR
Gm75184	predicted gene, 75184			186 bp upstream
Gm75190	predicted gene, 75190			822 bp downstream
Rr373619	regulatory region 373619			within coordinates
Rr561931	regulatory region 561931			1032 bp distal
Rr561932	regulatory region 561932			103 bp proximal
Rr561933	regulatory region 561933			370 bp proximal
Rr561934	regulatory region 561934			648 bp proximal
Tssr586	transcription start site region 586			578 bp downstream
Tssr19172	transcription start site region 19172			1029 bp downstream
Tssr19173	transcription start site region 19173			976 bp downstream
Tssr25500	transcription start site region 25500			13 bp upstream
Tssr25501	transcription start site region 25501			within coordinates
Tssr25502	transcription start site region 25502			601 bp downstream
Tssr25503	transcription start site region 25503			626 bp downstream