rs33587502 SNP Detail

Summary

• ID
  rs33587502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104548358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTCCCA TACTAGGGAA
  TATGGACTAG GAATATGGAA CTTGAACACA AAACTGAAAA TTGTGGATAG AGAAGTTAAG
  ATTCAGCAGA AAAGAAGATT CTAGTATTTA CCCTTGGTTT GTAGTCTAGC TGGAAAGCAG
  AGGTAGTTGA GTACTCTTAG CAAACAGTTT AGGGGAAAGT AAGGTTACCA TGGGAACAAA
  Y
  ACTGTTTTGT ATAGGTGTGA GAAAATGCTC AATTTAAGGA AACACTAGAT ATGCCTGCAT
  CTCTGAGGAA ATACTACTTA ATCTGCAGTT TGATAAAGGG GTGGGAGCTA GTTTGGCATA
  GGTGGTGATA GGTTGAAAGG GCATTTTTGA AGCTGAAAGA ATTTCATCAA AAACTAAAAC
  ATAGAAAGGT CAAAAATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46831698	NES10726438	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33587502					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831698	NES10726438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104548358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	1450 bp distal
Gm43581	predicted gene 43581	1952 bp upstream
Rr582559	regulatory region 582559	1010 bp distal
Rr582560	regulatory region 582560	1807 bp distal
Rr582561	regulatory region 582561	within coordinates
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	Intron