rs33587496 SNP Detail

Summary

• ID
  rs33587496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104536490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTGTGA TCTTGTCTGA
  GCTGATCAAA TGACTAGTCA AACAGAAAGG TTACATATGA TAGAGTTAGA AGTTCCACCT
  TGACTAATCC TTTTATTGAA AATAAAATAT AGCCCCATTA TCTAACCTGT CTGAACCTGA
  TGCAGACTGG GATTGTCATG CCTAGTGTTC TACCTCATCA CACCGATGCA TTGTTTGTCG
  Y
  GATGCATTGC TTGTCTGCAA TTTATGGTTT TGTACCTCTC ATTGGCCTCT GGCATAGTAT
  GTAATTTCTC CAGATTCTAG TACCTGATGT GGCTAGTGTA ATAAGGCAAA AATAACGAGG
  TATGTGTGCA TATGGGTGGA ATCTGGGAGG GGTGAAAATA CTCTAGGCAA AGTATTCTAA
  ACTTGGAGAT TATACTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46831692	NES10727196	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33587496					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831692	NES10727196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104536490 () rs orientation: forward

Symbol	Name	Function Class
Gm65207	predicted gene, 65207	within coordinates
Rr582553	regulatory region 582553	1892 bp proximal