rs33586191 SNP Detail

Summary

• ID
  rs33586191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17943048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAAGGG AAACCATTCT
  GAGATTTTAA ACTGCTCATG GACTATCAGT TCCTTATTAA AGGCTGGTTT TGTTGTACAA
  AATTTATTGA TGTTCAGTTC TATTTTATTT TGCCTTCAAA ACTGACTGAT CAAAAAGTAA
  AAAAAATAAA TAAATAAACT TTTGTGTATT GCAAGAACCT GTGTCGTCTT CTATCTTTAT
  Y
  CTAACCCTAT ACTTTTCAGT GTTCCCAGTA AACTAGTGGG TGTATGCTAT TCTTCGAGGA
  TATGGGTTCC TCAAAACCCA TACTGATTTT CTTTGCTGGC AGAACTCGTC TCTCTGCAGA
  GCCCAGAGCC CATGACTTGG TAGCTGGGAT ACTGTTCAGT GGTAGAGTAC TTACTTGCCT
  TGCATGGGGC CCTGGTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47816586	NES11703567	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33586191					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47816586	NES11703567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17943048 () rs orientation: forward

Symbol	Name	Function Class
Rr626887	regulatory region 626887	749 bp proximal
St7	suppression of tumorigenicity 7	26 bp downstream