rs33586186 SNP Detail

Summary

• ID
  rs33586186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17942788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCAGGC GTGCGCGGGA
  GAGTTGACCT TTGTCTTGGA CAAGCTTTCT CCTGACTGCT GTTTTTCTGA TTTCCTTGCA
  GTTCCTCAGC ACTTTGTTTG CCCCCTTGAA CTTTGTTATG GAGAAAGTGG AAAGCATCCT
  CCCCTCCAGT TTGTGGCATC AGCTGACACG GATCTGAGGG AGCCTCCCAT CCTTCACTTT
  Y
  CACACCATCC ACCATCTCTT CTGTGCCAAC CTCTCATGGA CCGCAAGAAA GCATGACTTT
  GAAAAAGGGA AACCATTCTG AGATTTTAAA CTGCTCATGG ACTATCAGTT CCTTATTAAA
  GGCTGGTTTT GTTGTACAAA ATTTATTGAT GTTCAGTTCT ATTTTATTTT GCCTTCAAAA
  CTGACTGATC AAAAAGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47816580	NES11703564	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33586186					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47816580	NES11703564	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17942788 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626887	regulatory region 626887			1009 bp proximal
St7	suppression of tumorigenicity 7			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant