rs33585458 SNP Detail

Summary

• ID
  rs33585458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136505340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAAGGCCT GTTGGAGAAT GTTTTCAAAG
  GAGAGTGACA GACATATTGC TGATGTTCAG GTGTTCCCAT CTGTGTCCAG GTCGCATTAA
  CTGACTTGCA ACACTCGTGT TTGAGGATCT CTGTTTGTGT TTACCAGTGT ACCTTCCCCG
  Y
  GCTTTAAGTG ACAAGAACTG ACTAAACAAG GACGGACAGA AACGGAACTC CTAACAGATG
  TTTCAATAAG TGCCGCTAAG ACACAGAATG CTTAGCTGAG CTGAACTTCG TCCAGGTGGC
  TTTAAAAAAC TAATAATAAT TTTCAGTTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49503767	NES12860857	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		C	C	T	C		C
ss319996190	CHEV_1_138474179	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33585458					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49503767	NES12860857	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136505340 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	1902 bp upstream
Rr419471	regulatory region 419471	341 bp proximal
Rr419472	regulatory region 419472	1741 bp proximal
Rr419473	regulatory region 419473	1865 bp proximal