rs33584905 SNP Detail

Summary

• ID
  rs33584905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85429980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT ACGGAGCCTA GCTTGGGGGA
  Y
  TACCCTGTAA TCCAGACTGA CACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46293370	mCV24193628	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145392333	ENSMUSSNP6389302	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss322751401	CHEV_8_87227250	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33584905					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85429980 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			Intron
Nfix	nuclear factor I/X			Intron
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			1166 bp upstream
Rr401025	regulatory region 401025			1866 bp downstream
Rr666583	regulatory region 666583			1797 bp distal
Rr666585	regulatory region 666585			1497 bp distal
Rr666586	regulatory region 666586			112 bp proximal
Rr666587	regulatory region 666587			486 bp proximal
Rr666588	regulatory region 666588			1235 bp proximal
Tssr78433	transcription start site region 78433			1854 bp downstream
Tssr78434	transcription start site region 78434			1582 bp downstream
Tssr78435	transcription start site region 78435			1553 bp downstream
Tssr78436	transcription start site region 78436			1524 bp downstream
Tssr78437	transcription start site region 78437			1469 bp downstream
Tssr78438	transcription start site region 78438			1441 bp downstream
Tssr78439	transcription start site region 78439			40 bp upstream
Tssr82116	transcription start site region 82116			1625 bp upstream
Tssr82117	transcription start site region 82117			1775 bp downstream
Tssr82118	transcription start site region 82118			1811 bp downstream
Tssr82119	transcription start site region 82119			1839 bp downstream
Tssr82120	transcription start site region 82120			1916 bp downstream