rs33584075 SNP Detail

Summary

• ID
  rs33584075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104550709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTCATA CCGAGTTCAA
  GGACAACCAG GCCTACATAA TTACAATCTT TTAAATTCTG TGTGTTCTTT AATTTGTCTT
  AACCACGTGG CATTTTCTTC CCTCTGCTTT AATTTTTTTT TCTTTTGGTG GAGTGGTGAC
  AGGTCATAGA TCTTACAGTA GATAACCTAC TGTAAGGGAT CTACTGTAAG AGTGAGCCCT
  R
  GTATCATACA AAAAGGAGTT TCAAAGCTCA ACACTCACAG TCACAGAATG AGCTAGCTCA
  CTTCACCAAG TAATGAAGGC TCGGCCTTTG AAGGATATCA TTGACCATAA ATAGTGAACA
  GGACCCAGTC CTGTTTATTG TCACACTACT ACCCTGTTGC TAATTACAGC CCATAATATT
  GTTCAATTTG ATTTGACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46831737	NES10726253	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33584075					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831737	NES10726253	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104550709 () rs orientation: forward

Symbol	Name	Function Class
Gm43581	predicted gene 43581	within coordinates
Rr397914	regulatory region 397914	680 bp upstream
Rr582561	regulatory region 582561	1911 bp distal
Rr582562	regulatory region 582562	313 bp proximal
Rr582563	regulatory region 582563	779 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	Intron
Tssr31046	transcription start site region 31046	1639 bp upstream