rs33583684 SNP Detail

Summary

• ID
  rs33583684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104433973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTAACA GGAGTTACAG
  TCAGGAAACT TTAGAGTGAA ATACATGTAG ATTCAGTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCCC TCTCTCTCTC TCTCTCATAT AACTAAGCAT TTGACTAAAG
  ACTCTACCAG TGTGCTTCCC ACGTGATGAG ACCTGCAGAG TAGGGCCTCA CTTTTCATTC
  Y
  AGAACACTGG AGATTGCTTC ATAATAGCTA AAGTAAACTG CTCCAGGAAG AACACACTTT
  AACATCTGGG CTCTAGAATA AGAGGTGTGG CCTAGCAGCT GAGTGTTTGC CTAGCATGTT
  CAAGGACTTG GGTTTTATCC TCAATGTCAG GGAGAAACGA AGAGAAAAAG AAAAAGAAAA
  AGAAAAAGGA AAAGGAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46830996	NES10732318	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33583684					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46830996	NES10732318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104433973 () rs orientation: forward

Symbol	Name	Function Class
A530041M06Rik	RIKEN cDNA A530041M06 gene	4 bp upstream
Rr582533	regulatory region 582533	858 bp distal
Rr582534	regulatory region 582534	within coordinates
Rr582535	regulatory region 582535	1240 bp proximal