rs33583630 SNP Detail

Summary

• ID
  rs33583630
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17765973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAAGCTCT GCATATTAAA AGCAGTTTAG TGTTAGAAGT
  TCAGGCACCA GCGATAAAGT ACATGCCTGT GTCCTCCTCT TTGGGCAGCA CATTTATGCA
  K
  CACACGCTGC TGTGTCATAA CTCTGCATGG AATGCTCCTT GGTGAACTTC ATTTTAAATA
  CTGGGGTCCT GAGCTCCCAT TCTAGGTTTT ATTTGTTGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47815422	NES11711335	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	T	G	G		G	G	G	G		T
ss321756245	CHEV_6_17715974	CHEVERUD	SCREENING_POP	f	SNP								G					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33583630					SNP	G	G	G	T	T	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815422	NES11711335	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17765973 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626856	regulatory region 626856			1009 bp distal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant