rs33582865 SNP Detail

Summary

• ID
  rs33582865
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17765250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTAAAG ACTGGAACAG
  GGAAGGGTGA CGCTGGCCCT TCAGGATAAC TCCAGCAACC CTGGCCAGGA GTGGGCATTG
  ACTTTTAGCA TCAAGAAAAT GAGTGCTATT TATTTTTCAA ATCCTTCCAC TGCTAGGCAA
  GTATGATTTT ATTAGTTCTC ATAAAACTTT TAAGATTATC TTCTAAATTA GTCAGTAGTG
  S
  ACTTAAAAGA TTTGTTTTAC ATAATCCCCA AGAGCTCCTT ACCCCTAAGC ATATGGTTCT
  AGGAAGGAAG GCTCAAGTGG TTCTTAGCTA TGGCAAATAG TATCATCTTA TACATCATGA
  AATTACTTAT GGATATGGTT GATTGTAATA GCTGGTATGG TCTGGCTCAT CTGGTTCCGT
  CCTGAACTGG CAGATGGGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47815406	NES11711327	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C	C		C	C	G	G	C	C
ss133022271	ENSMUSSNP1312405	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33582865					SNP	G	C	C	C	C	C	C	C	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815406	NES11711327	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17765250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626856	regulatory region 626856			286 bp distal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant