rs33580396 SNP Detail

Summary

• ID
  rs33580396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:96591952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGGTACA TTTTGATTGT
  GAAGGGCACT GTAAATTTTC ACAATTAATA ACATTGCAAA GGATTCCAAG AGCCATACCA
  GACACCATCA TGGTTCTCTG TAGCTCCTTT GCAGCTAGTC AGGAACCTTA AAGTGTATCA
  AAAAATTCAT GGTTTGTTTA GTCTCCCTTT TTATGTGTTT AATGGAGCAT ATCAGAAGCA
  Y
  TGGATGGAAC AAGAACAGAA TGTATCTTTA TCTAGCTAGT CCTTTCCTCT GTCTGTTGAC
  GTAATCTCAA ATAGATCTCA AACAACCTTC TTGTTGTCCC AATGTTTGAT TCCACAAGGT
  GTCTCTGTAT GTAGCATTTT CAAAAGAGAA AGAACTTGAA TGACTTTTCT TTCTCTTTAT
  ACAATTATTC TTGTCAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45295831	mCV24364613	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss146981836	ENSMUSSNP5679501	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33580396					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:96591952 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561438	regulatory region 561438	1665 bp proximal