rs33580216 SNP Detail

Summary

• ID
  rs33580216
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17762839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTCTATC ACTATTTATA
  GGGAGAAAAA AATACCTGTG GGTTTGCTTC TTGCTTTGTT TCTTTTAGTA TTCATAGTGG
  GGTACAGAAG AAATAGCTTT GTCTGTCAGT CCTTTTTAGT GCTAGTCCAT GTTGGCAATC
  TCTGTAGTTC CAACAGCCTT GTCTCTCTTA AGCTCTTACC AAGAAGCAAA GGTAATTTTG
  S
  ATTCAATGGG AGAGCTTGTT TTTTTTTTTT TTTTTTTTTT TTAAATTTAT TTAGCTATCA
  ATAAACTACT GGGCCCTGAG AACTTAGGTC ATCTGCTGGG AAATGATCAG TTGCCCACCT
  GACTGCAGTC CATTTGTTTT CAATCCTAAA TAGCCCGTCT CCAGCTTCTC TTGCTGAGGA
  AGCTGAAGTC TGCAAACGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47815372	NES11711310	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C	C	C	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33580216					SNP	G	C	C	C	C	C	C	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815372	NES11711310	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17762839 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52895	predicted gene, 52895			691 bp upstream
Rr379001	regulatory region 379001			1504 bp downstream
Rr626856	regulatory region 626856			1095 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			41 bp upstream