rs33579195 SNP Detail

Summary

• ID
  rs33579195
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17761946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTTTTGA ATTTTAAGTG
  CCTTAAACTA GCTGTTTCTG ATGAAGGCTC AGTAAACATC TCTTGTTCTT GTAAGATGGT
  GTTCTACCAG TCATGTGTGT TAGTGCCTCA TACCCTAAGT TACAGTGTGT TTTCCTTAAG
  CCTGGACTTT ATTTTGTTAT GTGTTAAATT GACTATTAAT AATAATTTGT CCACTTAATA
  S
  TTAGCAGTAT ATGTGTTGAG GGAGGCTAAG AGTTATTTTT ACAGAGGGAA CCTTAGTGGT
  TTCAGGTTTT ACCCTGATGT CAGCTACCAA TTATACCTAA TCTCATTCCA GAGAGTTTTA
  CTTACTGAAG TAAATGCGGT AATGCCAGTG TCCTCTTTAT TGTAGAAGCA TGTCTGAAAT
  CTAAATAGAA TTCACACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47815358	NES11711450	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	G		G	G	C	C	G	G
ss133022181	ENSMUSSNP4652802	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33579195					SNP	C	C	G	G	G	G	G	G	G	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815358	NES11711450	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17761946 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52895	predicted gene, 52895			within coordinates
Rr379001	regulatory region 379001			611 bp downstream
Rr626856	regulatory region 626856			1988 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			934 bp upstream