rs33578005 SNP Detail

Summary

• ID
  rs33578005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17721008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCGTGG TGCTGGGACC
  CCCGCTTCAG TGGGTAGCTG GTAGTCTGGT GGGGCTTTAG ATGTGTCAGT CCTTGGTGAT
  TTGGTGCATT CTTTGCTTAT CCACGTAAAT AGAGGAAGGG TTTTCATTTG TTTGGTTGGT
  TTTGTGCCAA TAGCTTGGCT ACTCACATTC TGTGACTCCT TCTGGCAGCC TAATAACTAT
  Y
  GGCAAGACAG GTATAGACTT ACAAACCTTT GGCAGACATC TTCAGAGAGA AAGCAAGGAA
  GGCCAGGAGG GCTGGGGCTG GTTTCCTGTC AGATAAAGGA GAGGCGACTT TCTTTGCTTC
  ATCAGAACTA ACTTATTTGT TTCTTTCCAC ACTCACACTA GACCTTTGTT TACTCTTGAT
  GAAACATACC TTTTCCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814992	NES11713697	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33578005					SNP	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814992	NES11713697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17721008 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43533	predicted gene 43533			496 bp downstream
Rr626841	regulatory region 626841			621 bp distal
Rr626842	regulatory region 626842			352 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant