rs33577587 SNP Detail

Summary

• ID
  rs33577587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17751110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGCCTTAT ACTAGGGTCT CTTCCATTGT TTGGCCTGTT
  TTTCCGAGAC GACACAGCCT TTTCTTTCAC CATCAAACCT TATCTTTTGA TAGTCTCACC
  Y
  GTGTGCTATG TGGTATATTT GAAAACTGCT CTTGGTTTCC ATAGCTACCG TTTTGGAACA
  GAATTGAACA CTGCTCAGCA AGCAGAACAC TGTCAGGCAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47815186	NES11712080	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33577587					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815186	NES11712080	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17751110 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626853	regulatory region 626853			1885 bp distal
Rr626854	regulatory region 626854			281 bp distal
Rr626855	regulatory region 626855			within coordinates
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55096	transcription start site region 55096			1960 bp downstream
Tssr55097	transcription start site region 55097			1846 bp downstream
Tssr55098	transcription start site region 55098			1539 bp downstream