rs33576054 SNP Detail

Summary

• ID
  rs33576054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17748937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCAAAC ATATGTAGCA
  TGTGTCTTTT CATCTACTTG TAATTAAATA AATGTACAGC CTTAGATGTC AGCCTTCCAT
  AATTTAGAGA TAATAATCTG GAGTCCTTCT GAAATTGCTT TTAAATGTAG ATCATTTTTC
  TCATTTCAGA TGCTCCTAAT TCCCTTGCAA AGCTTTATTT GCTGTAATAT AACCGAGAAC
  Y
  CTGATCTGCA TGTCATTGTG GTTAGCTGAT AGAAGGCCAG TATTTAAATT TCTTTGAGGT
  CTCTTGCTGA GTGGCGTCAC AGGATGAAGA GCTCTTCAGG AGGGGGAATG TGCTTGTGGT
  TTTTGGTCTT GTGCATTTTG TGACAAAGGA ATTCCCTTTT GAATCGCGCT GTTCCCTTGA
  AACCCTGGAG CCTCTGGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47815158	NES11712054	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	T	T	C	T	C
ss133021959	ENSMUSSNP5000768	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33576054					SNP	T	T	C	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815158	NES11712054	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17748937 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			38 bp upstream
Rr626852	regulatory region 626852			862 bp distal
Rr626853	regulatory region 626853			within coordinates
Rr626854	regulatory region 626854			289 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			150 bp upstream
Tssr55095	transcription start site region 55095			65 bp upstream
Tssr55096	transcription start site region 55096			202 bp upstream
Tssr55097	transcription start site region 55097			234 bp upstream
Tssr55098	transcription start site region 55098			630 bp upstream