rs33575058 SNP Detail

Summary

• ID
  rs33575058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17748296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTAAGA GCGGTGTCCA
  TTTTAAGACA TTTCTTTGTA AACAAGAGAA ATCATTGAAA AAGGTATGCA TGCTGAGAAT
  GAGTGGAGGG AGTTTCGAAC TCTTGAACTT TCTCCTGTCC ATGAGTTTTA AAGTGAAGCA
  TTATGCACGC AGTACCCATT TTGTACATTT CAGAATTTTA AAAGCATTGG AACAAACTTC
  Y
  GTCTTTGCTT GTGTGGAGTA GGCCACTCTA AAGAAAGTTC ACATACTTTT AATATGCGTG
  TTTTAAAACC AGATTTAGGA GAATAAGACT AAGAGAATGC AGGAAGACTT TTATTTGCTC
  CGTGAGTCAA GAAGCAAGTT GCTATTATTT TCAATTCTTT TTGTTTGAGC AGATTAAGAA
  GAAATAGGCT AGTCACAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47815150	NES11712048	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33575058					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815150	NES11712048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17748296 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			within coordinates
Rr626852	regulatory region 626852			221 bp distal
Rr626853	regulatory region 626853			383 bp proximal
Rr626854	regulatory region 626854			930 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			791 bp upstream
Tssr55095	transcription start site region 55095			706 bp upstream
Tssr55096	transcription start site region 55096			843 bp upstream
Tssr55097	transcription start site region 55097			875 bp upstream
Tssr55098	transcription start site region 55098			1271 bp upstream