rs33575057 SNP Detail

Summary

• ID
  rs33575057
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17748126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTTATGT ATGCTAAGAC
  AGTTTACTCT GAACAAATTG TACAGTGAAT ACAACGAACT GTTGTGTAAG CGGCTAAGAT
  GATGAAACAG AACTACATCT AATAGCCAGA GGAACTACTA AGGCTACTTT TAGGTGGAAT
  TTGCAGTTCT ACGTTCTTGC CATAAATTTA ATGTTTAAGA GCGGTGTCCA TTTTAAGACA
  K
  TTCTTTGTAA ACAAGAGAAA TCATTGAAAA AGGTATGCAT GCTGAGAATG AGTGGAGGGA
  GTTTCGAACT CTTGAACTTT CTCCTGTCCA TGAGTTTTAA AGTGAAGCAT TATGCACGCA
  GTACCCATTT TGTACATTTC AGAATTTTAA AAGCATTGGA ACAAACTTCC GTCTTTGCTT
  GTGTGGAGTA GGCCACTCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47815148	NES11712047	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T	T		T	T	G	G	T	G	T
ss133021950	ENSMUSSNP2067986	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33575057					SNP	G	G	T	T	T	T	T	T	T	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815148	NES11712047	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17748126 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			within coordinates
Rr626852	regulatory region 626852			51 bp distal
Rr626853	regulatory region 626853			553 bp proximal
Rr626854	regulatory region 626854			1100 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			961 bp upstream
Tssr55095	transcription start site region 55095			876 bp upstream
Tssr55096	transcription start site region 55096			1013 bp upstream
Tssr55097	transcription start site region 55097			1045 bp upstream
Tssr55098	transcription start site region 55098			1441 bp upstream