rs33574870 SNP Detail

Summary

• ID
  rs33574870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17676160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACTCACC TTTTCTATAT
  TTGGGTTCCA TGGTCCTCAC ATTCCAATGC TCTTAACCTC AGTCACTTTC AAACATTTAT
  GGGAGGACGT TTAGCACATC TACACTGTGA AACTTTCACC ATAGTTGACT TAACAAGCTT
  TTTCCAAGTA GGGGTGTTTG TTCTAGGGAA GAGAGAGACA CTGAACCCGT CAATAGCACC
  R
  TGTCAGAAAG AGCAGAGGAT GTAGCTCAGT TGACAAAGCG CATGTCCAGC ATGCCTAAAA
  CCCTCTGCGC GGTTCCCAAC AAAGCTTCCA ACGGGGCATG GTGCTGCACA CCGATATGCC
  AGCCCTGGAG GTGGAGGATG GAGGATCAGG GAGTTCACAT TCATTCCTAA CTACATAGAT
  AGCTGGAGGC TAGCTTGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814608	NES11715073	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	A	G	A	G
ss133020172	ENSMUSSNP6875636	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33574870					SNP	G	G	G	G	G	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814608	NES11715073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17676160 () rs orientation: forward

Symbol	Name	Function Class
Rr399579	regulatory region 399579	413 bp downstream
Rr626829	regulatory region 626829	327 bp distal
Rr626830	regulatory region 626830	566 bp distal