rs33574866 SNP Detail

Summary

• ID
  rs33574866
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17675845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGAAGAG AAGGTCCTTA AGATATGGAT CTACGAATAC
  CTCAACAAGT ATTTGTAGAA AGTTTGAAAA TATATTCTTA TGTTTTGAAG TTTTTCTTCA
  W
  TTGAGAACTT ACAATCCCTC TTGTCAAAAT CAAATGCATT CATGTATGTA TATTCCTTCC
  TTCTCTTCTT CCCCCCTCCC TGTGTTTGTT TGTTTGTTTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47814602	NES11715070	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33574866					SNP	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814602	NES11715070	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17675845 () rs orientation: forward

Symbol	Name	Function Class
Rr399579	regulatory region 399579	98 bp downstream
Rr626829	regulatory region 626829	12 bp distal
Rr626830	regulatory region 626830	251 bp distal