rs33574864 SNP Detail

Summary

• ID
  rs33574864
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17675788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGTCTTC TTTTTCAGGC
  TGATCAAATC TGAGCACTGT TGACTGAGGA CACTCAGCCA GGAAGTTCTG TAGGTATCCC
  ACATGCAGAA TACGAGTTTG TTGAAACTTG GCTGTTGTTC AGCAGAAGGA TGCTGCAAAC
  ACTTTTTCCC CCACGGCAGC TGAAGAGAAG GTCCTTAAGA TATGGATCTA CGAATACCTC
  W
  ACAAGTATTT GTAGAAAGTT TGAAAATATA TTCTTATGTT TTGAAGTTTT TCTTCATTTG
  AGAACTTACA ATCCCTCTTG TCAAAATCAA ATGCATTCAT GTATGTATAT TCCTTCCTTC
  TCTTCTTCCC CCCTCCCTGT GTTTGTTTGT TTGTTTGTTT GTTTTACAAT ACCTACTCAC
  CTTTTCTATA TTTGGGTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814600	NES11715069	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A	A	A	T	T	A	T	A
ss133020170	ENSMUSSNP4239064	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33574864					SNP	T	A	A	A	A	A	A	A	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814600	NES11715069	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17675788 () rs orientation: forward

Symbol	Name	Function Class
Rr399579	regulatory region 399579	41 bp downstream
Rr626829	regulatory region 626829	within coordinates
Rr626830	regulatory region 626830	194 bp distal