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rs33574168 SNP Detail
Summary
  • ID
    rs33574168
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:17746842 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAATGTTAA GAAACTTCAA
    ATCAGTTTTA TTATTCCTCA TTTGCTTCCA TTATATTTTC TTTAGGGACA CATTAAAATA
    CGTGTTTATT CGCTGAGTAC CCTAGAGGAG ATAATTAGAG CAAATGAAAC ATCTGAAGCA
    GTTTTTGTCA ACGAGGATTA CTCGGTGATG AGCAACCAAA CTTTCTAAGG TGCTTGAAAT
    R
    CCTCAGGCCT CCAAATAAGA GGAGTCAAGT GGGGTGAACT CTGCCCCATG TTGTTGACAT
    GTCAGGTGCC AAGTTTATAG CATCCTGATG CCTCTAAGGT TATCTAAAAA GAAGGCTTCT
    TGGAAAATTT TGGAACCTTT AAAATAATTC TTATAACCCT GTGCCCCAAA AGAGACATTG
    ATCTGTGATC TGTGCATTGA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss47815138 NES11712250 PERLEGEN MM_PANEL2 f SNP A G G G G G G G G G A A G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33574168 SNP A G G G G G G G G G A A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47815138 NES11712250 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:17746842 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm42852 predicted gene 42852 679 bp downstream
Rr626852 regulatory region 626852 835 bp proximal
Rr626853 regulatory region 626853 1837 bp proximal
St7 suppression of tumorigenicity 7 Intron
Noncoding-Transcript-Variant
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory