rs33574164 SNP Detail

Summary

• ID
  rs33574164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17746732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCATTTGT AAGTGGGAGG
  GCAAAGTCCT AGGCATTAAT AATTAGACAA CGTGAATTCA ACGATTACTT TGCTTTTGAA
  ATCTATGTGA CCTTTTTTGG CAGGGGGAAT AGAATGTTAA GAAACTTCAA ATCAGTTTTA
  TTATTCCTCA TTTGCTTCCA TTATATTTTC TTTAGGGACA CATTAAAATA CGTGTTTATT
  Y
  GCTGAGTACC CTAGAGGAGA TAATTAGAGC AAATGAAACA TCTGAAGCAG TTTTTGTCAA
  CGAGGATTAC TCGGTGATGA GCAACCAAAC TTTCTAAGGT GCTTGAAATG CCTCAGGCCT
  CCAAATAAGA GGAGTCAAGT GGGGTGAACT CTGCCCCATG TTGTTGACAT GTCAGGTGCC
  AAGTTTATAG CATCCTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47815134	NES11712248	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33574164					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815134	NES11712248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17746732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			789 bp downstream
Rr626852	regulatory region 626852			945 bp proximal
Rr626853	regulatory region 626853			1947 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant