rs33573970 SNP Detail

Summary

• ID
  rs33573970
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127966482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCATGGG TGGGATGCCG AGTGGCCAAG GCACAGTACT
  GCTTCACAGA CCTTGGTCAG GACAGACCTG GATCGGCGGT GTACTTGACT TCATCCACGC
  M
  CTTGCCCTGT GCGCTCTTGT AGCGATCACC CCTGACCTCC AGCAGGAGCA AGGCTTTGCC
  TTGAACACCC CAGCTTCCCT GGGAACCAAT GGCTTCTTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45295120	mCV22674879	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss147552333	ENSMUSSNP4932163	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33573970					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127966482 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	1476 bp upstream
Cpgi12233	CpG island 12233	1345 bp distal
Cpgi12234	CpG island 12234	606 bp distal
Cpgi12235	CpG island 12235	466 bp proximal
Gm74510	predicted gene, 74510	1655 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr564648	regulatory region 564648	15 bp distal
Rr564649	regulatory region 564649	1943 bp distal
Rr564650	regulatory region 564650	1259 bp distal
Rr564651	regulatory region 564651	986 bp proximal
Rr564652	regulatory region 564652	1591 bp proximal
Rr564653	regulatory region 564653	1666 bp proximal
Tssr20042	transcription start site region 20042	1468 bp upstream