rs33573859 SNP Detail

Summary

• ID
  rs33573859
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20201141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCCCTCC AATGCTACTT
  AGTTAAGATT ATCTAGTTTA TTCTTCTACT GAATTTAAAC ATGTTGAATA GCCAACTGCT
  TAACTTTTTC ACTTTGAATA CCTGAGAAAG CCCATCCCTT TGCCAGGAGC AAGTGAAAAG
  AAGGTCAGGG TCTGGAACGC TACAGTTAAA TGAAGAATCA TGTTGCAGCA CAGAGAATCG
  M
  AGAAGTTCAC GTTCTGACTG AAAAGGCAGA CACACTTTCC AAGGAACACT GCACACACTC
  AAGCTGCTTA GCAACGGGCC CTCCGTGACT AGGGCCTCCA TAATGCACAG TGCCTCTTGG
  CTGCTAGCTG TTAACTTCAT TTCCTCTTCT TTAGCTGTAC CCTGAATAAC TTAATATGGC
  ATGTGACTAC TGGGATCTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46829981	NES10860601	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33573859					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46829981	NES10860601	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20201141 () rs orientation: forward

Symbol	Name	Function Class
Gyg1	glycogenin 1	Intron
Rr1075	regulatory region 1075	963 bp downstream
Rr574067	regulatory region 574067	807 bp distal