rs33573800 SNP Detail

Summary

• ID
  rs33573800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17675579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTACTTCT TACCTATTTT
  ATGTTTTGTC GTTTCTGTTA CTAGAGATAT CATGAATGGC TCCACTAAGT GTTTCAATGC
  TCTGCATAAT CGGAAAAGTG GTTTGTGATT CTAAGCATGC GCTTGAGCGG GGTGATAGGA
  CAGGACAGTT CTGACATTTT CAGCAAGGAG ATGAATCTCA TGCAATTCTT GAAAGCTGCC
  R
  GCAGGTGTCG CTGTCTTCTT TTTCAGGCTG ATCAAATCTG AGCACTGTTG ACTGAGGACA
  CTCAGCCAGG AAGTTCTGTA GGTATCCCAC ATGCAGAATA CGAGTTTGTT GAAACTTGGC
  TGTTGTTCAG CAGAAGGATG CTGCAAACAC TTTTTCCCCC ACGGCAGCTG AAGAGAAGGT
  CCTTAAGATA TGGATCTACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47814596	NES11715067	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	A	G	G	G	A	A	G	G
ss133020164	ENSMUSSNP6915839	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33573800					SNP	A	G	G	G	G	G	A	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814596	NES11715067	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17675579 () rs orientation: forward

Symbol	Name	Function Class
Rr399579	regulatory region 399579	within coordinates
Rr626829	regulatory region 626829	within coordinates
Rr626830	regulatory region 626830	within coordinates