rs33573797 SNP Detail

Summary

• ID
  rs33573797
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17675357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCACAATG GAAAGATCTA
  AGCTACTGTT TCAGTGCCGT GCCTGTCTGC TGCCAGTCAT AATGGTTGGT CATGGACTAA
  GCCTCTAAGA CTGTCAGCAA ACATGCAAAT AAATGCTTTC TTTCCCAGCA ATTCTCTTGG
  TCACGAGACA GCAATAGAAC AGTTAACTAT ATATTCTGCA GCACATTCAC TGAACCCATT
  S
  TCACCTGCAC AGTTTTTCTT TTTCTACTTC TTACCTATTT TATGTTTTGT CGTTTCTGTT
  ACTAGAGATA TCATGAATGG CTCCACTAAG TGTTTCAATG CTCTGCATAA TCGGAAAAGT
  GGTTTGTGAT TCTAAGCATG CGCTTGAGCG GGGTGATAGG ACAGGACAGT TCTGACATTT
  TCAGCAAGGA GATGAATCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814592	NES11715065	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	G	C	C	C	G	G	C	G	C
ss133020161	ENSMUSSNP6015940	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33573797					SNP	G	G	C	C	C	C	C	G	C	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814592	NES11715065	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17675357 () rs orientation: forward

Symbol	Name	Function Class
Rr399579	regulatory region 399579	90 bp upstream
Rr626829	regulatory region 626829	within coordinates
Rr626830	regulatory region 626830	216 bp proximal