rs33573795 SNP Detail

Summary

• ID
  rs33573795
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17674007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTAGGA ACATTGAAAA
  TTATCCTGCC GTCTGTTTAT GGCCAAGGTA TTTGTAAATA TATTTTGAGT CTGAGTCTTA
  TTTCTGGGAG AATGGGGCTA TGAAAAAGAA CCAGTCCTAA CTTCTACAGT CTTAAAAATA
  AAATTTCGCT CTCACACCGT CTCATCTGAT AGTTAAGAAA AAAATATACC AAATGGGCTT
  K
  AAGATATAGC TGAATCAAAT AATGGACATT TTAAAATTAA TAAGCTTTAT TCAGGTTGCT
  TTCAACAACC TTCAAAACTA GAAAGGAAAA GGGTAGAAAA GGATTTTTTC TTCTCTCAGG
  GCATTTACAA TTGAAAAAGA ATGAAAAAAA AGCCAGAAAG ACAGAAAGAA AGAAAGAAAG
  AAAGAAAGAA AGAAAGACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814588	NES11715084	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33573795					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814588	NES11715084	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17674007 () rs orientation: forward

Symbol	Name	Function Class
Rr399579	regulatory region 399579	1440 bp upstream
Rr626829	regulatory region 626829	1283 bp proximal
Rr626830	regulatory region 626830	1566 bp proximal