rs33572139 SNP Detail

Summary

• ID
  rs33572139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20199603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATACAG ATCCATAAGC
  AGCCTTAATG TAGGATATTT TAGAGACACA GGGGAAAGAA AGTACAGTCC AGAACTTGTG
  CAGACTGAGT GCAAATTTAG AGGCCAAAGT GTCGGCTTCA TCTCACCCCA TGAGTGCTTA
  TGGTATCGTG ATCTCTTTCT ATCGTTAATA CGCCTGAACT TCATCTTCTT CCTCTGAAAT
  K
  TTTGTGTATT ATCCTATAAA ATCTAATGGA CCTTCACAAA AGCTATTGTT CAGCTTTTCA
  GGAAACTTAA ATAGAGAAGA AGTTTCAAGC TAATTTAAAA ATACACAAAA CTTTATAGGA
  AATTGGACTT AACACTTGCC CCTAAGGAAA ACAGAGGCTA GTAATGAATG AAGTATGTTG
  TCACTAGTTG TAATTCTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46829960	NES10860723	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33572139					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46829960	NES10860723	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20199603 () rs orientation: forward

Symbol	Name	Function Class
Gyg1	glycogenin 1	Intron
Rr1075	regulatory region 1075	within coordinates
Rr574067	regulatory region 574067	148 bp proximal