rs33571268 SNP Detail

Summary

• ID
  rs33571268
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20199255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCAGAC TAACTACACA
  GATTAGGGAA GGTACACCAA ACCTATAAGA CATGATCAGA TTCTCAGGAT ATCAAGGAAA
  ATTAAGAAAC TGGAGCAATA CCAACTTTAT TACAGATCCT TGATACAACT TCAAGTAAAA
  TAAAATCTAA TATTCTGCTA CAAATATTTA TTCTCTATTT TCTCCAAACT TTAATTATAA
  W
  CCCAAGTTCT AGTACATAAA TTAAAAATTT AGGGTAATTA GGGTACTTTT ATTATAACAA
  TTAAAGCTAC TATCAAGACT AAATAAACAA ACAATAAGGC ACTCCCGATT GGGCAATATG
  AACTCTTGTA ACGAGTTTTT AAAACTAACA CATACAGATC CATAAGCAGC CTTAATGTAG
  GATATTTTAG AGACACAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46829948	NES10860717	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33571268					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46829948	NES10860717	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20199255 () rs orientation: forward

Symbol	Name	Function Class
Gyg1	glycogenin 1	Intron
Rr1075	regulatory region 1075	within coordinates
Rr574067	regulatory region 574067	496 bp proximal