rs33570660 SNP Detail

Summary

• ID
  rs33570660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114441965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTGTGGT ATCTTTGACT CCTGACTTCA GCAATGTTTC
  CTCACAGTCT GTTTCACTCA TTGTCCAAGT TCCACCTAAA GTTTTTTTCC CAGTCTGACA
  Y
  TTGTAGTGAC TCCTTCTCAA GAAAGAAAAG CTTTTCTATT AGTAATTAAT CTATGTGCAT
  AGAAATTAAT AAAAAGTATC ATTACTAAAT ATATAAACAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47314111	NES11386717	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33570660					SNP	C	C	C	C	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47314111	NES11386717	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114441965 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	662 bp downstream
Tssr3975	transcription start site region 3975	1146 bp downstream
Tssr118082	transcription start site region 118082	1161 bp downstream