rs33570654 SNP Detail

Summary

• ID
  rs33570654
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114441282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATTTTATACA TTTCTAGAGG CACATCCTGA ATCTAGCCCA
  GTAATCTAAG TTCATTCCTA CATATACCCT TGATTTCAAT CTCCAAGTTA AAGCAAGCAA
  W
  TTTGAAAGCC TTGGGCTTAT TCTACATCCT AATGTCAATC AATCTGCCAG TGCACCTAAG
  GCTCCCAAAC AACTGTTTAC TGTTCAGTAC ATTTTATTCA A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47314105	NES11386781	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	A	T	T	T	A
ss138784424	ENSMUSSNP5161499	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33570654					SNP	T	T	T	T	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47314105	NES11386781	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114441282 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	1345 bp downstream
Tssr3975	transcription start site region 3975	1829 bp downstream
Tssr118082	transcription start site region 118082	1844 bp downstream