rs33568939 SNP Detail

Summary

• ID
  rs33568939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114441159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATTTTTTT TATCCACAGC CTTAAGTAGG ACTATTCTTG
  GCTTAGAGCC TTAGTTCAAA GACATAACAC ATTCTCACAT GTGTAAGCTA GGATCTGAAT
  S
  TGTTTCAACT ATACAGACTT TAATTTTATA CATTTCTAGA GGCACATCCT GAATCTAGCC
  CAGTAATCTA AGTTCATTCC TACATATACC CTTGATTTCA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47314090	NES11386776	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33568939					SNP	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47314090	NES11386776	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114441159 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	1468 bp downstream
Tssr3975	transcription start site region 3975	1952 bp downstream
Tssr118082	transcription start site region 118082	1967 bp downstream