rs33568546 SNP Detail

Summary

• ID
  rs33568546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104197156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAAGTCT CTCTCTCTCT
  CTCTCTCCCT CTCCCTCTCC CTCTCCCTCC CCCCCCCCCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCGGGGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC
  ATGCTTACTA GACCAAATTA TCGTAAGATC ATGATTAGGA TGGGTATATT ACAAATGGAT
  Y
  GCACATAGAA GGTGATTAGC ACTATAAATC AACTTGTCTT GCCTTCTAGT GGATTGCAAA
  GTTCTTTGGA ACAAATTCTA TATTCAAAGA AAATGTAGCC ATTGCTCAAT AAGGGTCTTG
  ATAAGAAAAT CTTGGGAATC AAGTTATAAA TACCAAGATT CTAATACTAA CTTAGCGTAT
  CTTTGATGGT TTTGTCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46829202	NES10700044	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	T	T	C	C	T		C	C	C	C		C
ss320860108	CHEV_3_104093763	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33568546					SNP	T	T	C	C	C	T	T	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46829202	NES10700044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104197156 () rs orientation: forward

Symbol	Name	Function Class
Rr582481	regulatory region 582481	1582 bp distal
Rr582482	regulatory region 582482	208 bp distal