rs33567822 SNP Detail

Summary

• ID
  rs33567822
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17627051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCTCTT CCAATATTGA
  GGGTACTGAT GTTCATCAAC TCTAAAGAAA CACAAGCTTT TCAAAAAAGA CAGAAAGAAA
  AGAAGTCATT CTTTCTATTC TTGGCGATGA GTTCTCCATG CCTCTTTCAC ACTTGTGGAA
  AAAAAAAAGT GTCCAAGTTC GTTTTCTGCA TTTGTAGCAT ATTTTTAGAA ATAAAACTAA
  W
  ATAGTGAATT TAAAAAAAAA GAAAAAAGTA ATGTTCATGA AAATAGGGAT TCGAAGAACA
  AAATAAAGGA AAGTTTTATA TTAAAAACAT ATATTTAAAT TTTTAAATAT TAAAAATATA
  CTTAAAAACA CTGAATTTTT TTTTTAAATT AGTTTCCCAT TGGCTGTTTG GTTTGCAGTG
  CTTATGGTGT TTATATAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814274	NES11716677	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	A	T	T	T	A	A	T	A	T
ss133019192	ENSMUSSNP252496	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33567822					SNP	A	A	T	T	T	T	T	A	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814274	NES11716677	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17627051 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	1997 bp proximal