rs33567679 SNP Detail

Summary

• ID
  rs33567679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17594994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCAGCCT GGTTTACAAA
  GTGAGTTCCA GGACAGCCAG GGCTATACAG AGAAACCCTG TCTCGAAAAA CAAAAAACAA
  CAAAACAACA ACAACAACAA AGTCAGAAGG AAAACACCTC CTTTGACAAA CAGTAAGTCT
  GAGCATGGGT CACAATGAAA AGCACACATG TGCTCAGGTC TGAGACTCTA GAGAGAAAAT
  Y
  GCAACATAAA CACAATCTGA GATGCCCAAC TCTACATGCT GATGCTATAG TCTTCATTGC
  ATGCTCCCAA AACGACCTTG GATTTCAGAT GTGAAGACAA CAACAACAAA TTCTTATCTT
  CACTCTGAAA TTTGGAAAAT GTAAGACACT CTTAGCCTCA GGCACTCCTT TTAAAAAAAA
  GTATTTTACA CACACACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47813976	NES11717836	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33567679					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47813976	NES11717836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17594994 () rs orientation: forward

Symbol	Name	Function Class
Gm53318	predicted gene, 53318	within coordinates
Rr626818	regulatory region 626818	691 bp proximal