rs33565045 SNP Detail

Summary

• ID
  rs33565045
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17630560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTGGGAC AATGAGAGTC
  CACCCTGCTT CTGTCCTCCC AATTGTAGAT CAGTTGTTAA GTTGTTCATA TTCTAGGTAT
  GGGTGGGAGA GGTGGCTCAG CCTTTCAAGG CTAAGGCTCA CAACCAAACA GACAAGTTAA
  TCATGACCCC GTGAACAACC CCTCACTGAT ACTTATGCAG GTAACCATTG TTAAATTCAG
  W
  GGTCACAAAA CAACAACAAC AACAACAAAA AAAACAAAAT GGAAATAGGA GTTCACTTGT
  TGAGAAGAAG AGGTTTGGTG GGAGTGGGGG GGGGAATAAG AAAGGTTAAT TAGGTGGTGA
  CAGTTCACAT ATATACATAG ATGGAGATGT CAAAGAATAC CACATTTCTT AAAAGGCAGG
  AATATTTTTA AAGGACGGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814326	NES11716544	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	T	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33565045					SNP	A	T	T	T	T	T	T	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814326	NES11716544	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17630560 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	1162 bp distal
Rr626821	regulatory region 626821	372 bp distal
Rr626822	regulatory region 626822	1148 bp proximal