rs33563679 SNP Detail

Summary

• ID
  rs33563679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131869688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTGTCAAA AGTACAGCCC TGCCCATACC TCTAGCTGGG
  ATCCTTAGCC ATCCCTAAGA GGCGCGCACA CAGGGCCAGA CAAGAAGCCT TGCTGCGAGG
  Y
  ACCAGGAAAG AAGTCAAAGG GAAACCAGTC AGCCTCTGAG ACCCTAACAA GCGGACCCTA
  ACACCTGAGA GAGGAAGTAA ACTGAAAACA AGGGATGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45293453	mCV23344134	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss147616090	ENSMUSSNP501013	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss320508271	CHEV_2_131853504	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33563679					SNP	C	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131869688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12299	CpG island 12299	1295 bp proximal
Rassf2	Ras association (RalGDS/AF-6) domain family member 2	Intron
Rr367316	regulatory region 367316	1521 bp upstream
Rr565378	regulatory region 565378	18 bp distal
Rr565379	regulatory region 565379	142 bp proximal
Rr565380	regulatory region 565380	1728 bp proximal
Tssr20292	transcription start site region 20292	84 bp downstream
Tssr20293	transcription start site region 20293	576 bp upstream
Tssr26436	transcription start site region 26436	1393 bp downstream
Tssr26437	transcription start site region 26437	1420 bp downstream