rs33559406 SNP Detail

Summary

• ID
  rs33559406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20018714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGTACA CAGATGGCAC
  CTTTAGTAAG ACTATAGACA AACCAGCCTG GCTAGGGTTT TTAGGCCCTG TCATCAAAGC
  TGAAGTTGAA GATAAAGTTT ATGTTCACTT AAAGAACCTT GCCTCTAGGA TCTACACTTT
  TCATGCACAT GGGGTAACGT ACACCAAGGA GTATGAGGGT AAGTGCAGTG TGTGTTCTAG
  Y
  TGGAGTTTCC TCTTTTCAGT AGGAAACCTT TTGACTTCTA GAATCGATGC CTTTAGATAG
  AACTTATAAC TGCACCCTTT AAAATCACAT CACAATAGTG CTGTTTCCTC TAGTTACGTG
  ACTTTGTGTA ATGGAAAATG CTACACATGA CTAAATGGAC TGCAAGCTGA TAATGACAGC
  CACAGCTGGA TCACCAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827619	NES10867599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33559406					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827619	NES10867599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20018714 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cp	ceruloplasmin			Intron
				Noncoding-Transcript-Variant
Rr574044	regulatory region 574044			1181 bp distal
Rr574045	regulatory region 574045			38 bp proximal
Rr574046	regulatory region 574046			766 bp proximal
Tssr28543	transcription start site region 28543			1795 bp upstream
Tssr28544	transcription start site region 28544			1813 bp upstream