rs33554942 SNP Detail

Summary

• ID
  rs33554942
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153083923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATTCGAC AGATGGGAGA AGTTAAGTGA CTCACTCGAG
  GTCTAATCAG TCTCAGATCA GTAGATGGAG TTTGTAGGAC AAGACCTGCC CGCACTGTCT
  S
  GTGGCAATTC TTGCATTCAT TCAGCAAAGA ATTTATATGC CCCCCCCCCT TTTTTTTAAT
  GTCCCAGGCG CTGTTGTCTG TGCTGGTGGT GAATGAAAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45292167	mCV23160856	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33554942					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153083923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	111 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	645 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	588 bp distal
Rr567589	regulatory region 567589	415 bp distal
Rr567590	regulatory region 567590	26 bp distal
Tssr20880	transcription start site region 20880	1077 bp downstream
Tssr20881	transcription start site region 20881	1060 bp downstream
Tssr20882	transcription start site region 20882	537 bp downstream
Tssr20883	transcription start site region 20883	400 bp downstream
Tssr20884	transcription start site region 20884	385 bp downstream
Tssr26895	transcription start site region 26895	649 bp upstream
Tssr26896	transcription start site region 26896	609 bp upstream
Tssr26897	transcription start site region 26897	592 bp upstream
Tssr26898	transcription start site region 26898	503 bp upstream
Tssr26899	transcription start site region 26899	279 bp upstream