rs33553581 SNP Detail

Summary

• ID
  rs33553581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20020215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTACAT TTTTTGGGTT
  CTGTAATTAC AACACACAGA GAGATCTGAT ATTATATAGG AAATTTCAAA TTATTTGAGA
  GGGGTGGTTA CTTTGCTTAA TGTTTTTATA CCATGACCCA AAGGTGAGAA CTTTCCCTTA
  AATTATGAAA CTCTCAATCA TCCTGAAATG GCTGTTGTGT ATGACTCAGT CAATTACCAA
  Y
  TTAATAATTA TCATTCTCTG AGACTTATAG GCCCCCTAGA CATTAGCCTC TCATTTCTTT
  TTTTATAAGT CCAAATAGGA CATTACTAAA TGTCCAAAGG ACAGCCACTA GATGATGAGG
  ACTGACAATT ATTTCAACTA TGTTCAAATG TACTCACTTT CTATCTTCAC TGCATGATGC
  TTTCCAGGAG CCGTCTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827649	NES10867491	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss134671365	ENSMUSSNP5502289	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33553581					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827649	NES10867491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20020215 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cp	ceruloplasmin			Intron
				Noncoding-Transcript-Variant
Rr574045	regulatory region 574045			981 bp distal
Rr574046	regulatory region 574046			440 bp distal
Tssr28543	transcription start site region 28543			294 bp upstream
Tssr28544	transcription start site region 28544			312 bp upstream