rs33552633 SNP Detail

Summary

• ID
  rs33552633
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17487154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAACCT AAAAGCCATG
  CACACTCAAT ACTGCACTAC TGGGTCAGCT TGGATGCAAA TGAGTTATAA GATTGCTTGG
  CCTTCCCTTA GGGAGTCAGC ATTCATTTAT TTACCTTCAG TTTTTTGGAG AAAAATATAA
  AGATTGTGTT CTCATTCCTG GAAGATATAC TGATGTGTGT CGTGTTAAGA AACAATTTTT
  M
  ATAAAATGTA CTCTGGACTG ATATGACAAT TTGTCTCCTA TCCTTATTTT TTATTCCCTC
  TTGTTTCCCT CACCAGCATC AAAAAAAAAA AAAATTCTAG TATATTTCTG AACAATGAGA
  AGTACACTTA AAAATAGCAA GTTCAGCTCC AGTCGCCATA TATACTCTAA GATGGTCATG
  TATCTTCGAA CTGTCCGCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47812496	NES11721658	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33552633					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47812496	NES11721658	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17487154 () rs orientation: forward

Symbol	Name	Function Class
Met	met proto-oncogene, receptor tyrosine kinase	Intron
Rr626803	regulatory region 626803	1358 bp proximal