rs33552628 SNP Detail

Summary

• ID
  rs33552628
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17486949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATTTG CTGTCCCATC
  CAATGAGACA ACAACAACAA CAACAAAAAT CTCATTCATA CATTTGCTGG ATTTTAGTTT
  GTTAAGCATC AGCACGGTAC GTGACATACA TATAAACCTT AGAACATGTT TCTTATTTTA
  AAAACATAGG TAACTCGTCA GAATGTAAAA ACAAAATAAA GATTATTCTG AAGCTTCTTT
  S
  ACAAGAGAAA ACCTAAAAGC CATGCACACT CAATACTGCA CTACTGGGTC AGCTTGGATG
  CAAATGAGTT ATAAGATTGC TTGGCCTTCC CTTAGGGAGT CAGCATTCAT TTATTTACCT
  TCAGTTTTTT GGAGAAAAAT ATAAAGATTG TGTTCTCATT CCTGGAAGAT ATACTGATGT
  GTGTCGTGTT AAGAAACAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47812490	NES11721655	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33552628					SNP	C	C	C	C	C	G	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47812490	NES11721655	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17486949 () rs orientation: forward

Symbol	Name	Function Class
Met	met proto-oncogene	Intron
Rr626803	regulatory region 626803	1563 bp proximal