rs33552020 SNP Detail

Summary

• ID
  rs33552020
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20018902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTTCT AGCTGGAGTT
  TCCTCTTTTC AGTAGGAAAC CTTTTGACTT CTAGAATCGA TGCCTTTAGA TAGAACTTAT
  AACTGCACCC TTTAAAATCA CATCACAATA GTGCTGTTTC CTCTAGTTAC GTGACTTTGT
  GTAATGGAAA ATGCTACACA TGACTAAATG GACTGCAAGC TGATAATGAC AGCCACAGCT
  K
  GATCACCAGT ACTTAATTCT TTATTTAATA GAGGAAGAAT GTGAGAATGT GAGAAGCAGA
  TAATGTGCCT GACAACTTAA AAGTGGCATG AAGTCAGAGA AGAGAAGGGG TCAGTGTGGA
  AGCTCTTATC TTTGGAATTC TTCCACTGGT CATATTGTAG CTGCTATCAT CTTCCATTCT
  GACCTCTCAT AAAACTCCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827628	NES10867607	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33552020					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827628	NES10867607	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20018902 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cp	ceruloplasmin			Intron
				Noncoding-Transcript-Variant
Rr574044	regulatory region 574044			1369 bp distal
Rr574045	regulatory region 574045			within coordinates
Rr574046	regulatory region 574046			578 bp proximal
Tssr28543	transcription start site region 28543			1607 bp upstream
Tssr28544	transcription start site region 28544			1625 bp upstream