rs33542531 SNP Detail

Summary

• ID
  rs33542531
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:135723072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCACCACT CGCTAGAATT
  TCCAGAGTGA TTTATCTTCT TTTCCTCCAA ATGCTCCCTG GTGTTCTGAT TAGGGTTATA
  AGATTGAGCC CAGGGAAACT CACATTTCAC TGCACCGACT CTTTTGCAAA GTGTGTTTAA
  ATGTACTCTG CATTACTTTC AAGTCCTCAG TATTTTGGTT TCTTTTGCTA TTGTTAATTT
  K
  CTTGATAACA TTTCCAAGTA TTATCCTCCC CATATGTTTT ATATATATAT ATAAAATATA
  TACATATGTT ATATATATAA AACATATATG TATATGTTAT ATATATGTAT ATATGTGACA
  TATATACTTG TATACACATA CCTAAGTATA CATAAATGTA TGATATACAC ACACATCTTG
  CTCTTAGTGG CAAGTGGCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47310520	NES11528692	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33542531					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47310520	NES11528692	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:135723072 () rs orientation: forward

Symbol	Name	Function Class
D7Mit290	DNA segment, Chr 7, Massachusetts Institute of Technology 290	1960 bp distal
Rr381537	regulatory region 381537	376 bp downstream