rs33542528 SNP Detail

Summary

• ID
  rs33542528
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:135722928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGGCCTT TGGGTGCCTC
  TGCGGCCACG TCTTGGCTCT CTTCTGGGGG TGGGGGGCAC TGAAGTGCGA AGATATTCAC
  AGCTCCCATG CTCACTCTGC CACCTGTTAC GTTGCTGGAC GGGTGTTCTC TGGGTTTCCT
  GTGCTGTCAC CACTCGCTAG AATTTCCAGA GTGATTTATC TTCTTTTCCT CCAAATGCTC
  M
  CTGGTGTTCT GATTAGGGTT ATAAGATTGA GCCCAGGGAA ACTCACATTT CACTGCACCG
  ACTCTTTTGC AAAGTGTGTT TAAATGTACT CTGCATTACT TTCAAGTCCT CAGTATTTTG
  GTTTCTTTTG CTATTGTTAA TTTTCTTGAT AACATTTCCA AGTATTATCC TCCCCATATG
  TTTTATATAT ATATATAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47310517	NES11528691	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33542528					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47310517	NES11528691	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:135722928 () rs orientation: forward

Symbol	Name	Function Class
D7Mit290	DNA segment, Chr 7, Massachusetts Institute of Technology 290	1816 bp distal
Rr381537	regulatory region 381537	232 bp downstream