rs33541590 SNP Detail

Summary

• ID
  rs33541590
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:135722458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGGCTT TATTTGCTGC
  ATGCGTTGTT TTTTTCCCTG TTACCGCTGC TCATTTTTTT CCTCCCCTGT TCATTATTTT
  CTTTTCCCTA CTGATTTACA GTTTGGGGCC ATATGTGGTA CAAAAGTTGT TCTCAAGGAA
  ATAGCTTTCA CTTACATTGT TTTTTCCCCT CTACTTTTGA TAAACCATTA GTTCCCACAT
  M
  CTACACGTTT CTAAGGTCGC CAAACCTGTC TCTTGAGCTC TAGGGTTTGT GCTGCAGAGA
  TAATATTAAA AAGAAAGAGC CTGTCTTTTA CATTTAATAG TTCTGGGCTT TGATTTTTTT
  TTTTTTAACA TTCCCATGTC TGATCTATCT GGAAATAATT TGGGTGAGAA AAGAGAGGTA
  GACATTTCAA ATGTCTGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47310508	NES11528688	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33541590					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47310508	NES11528688	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:135722458 () rs orientation: forward

Symbol	Name	Function Class
D7Mit290	DNA segment, Chr 7, Massachusetts Institute of Technology 290	1346 bp distal
Rr381537	regulatory region 381537	within coordinates